Transcript: BOK-AS1:6

Basic information

LNCipedia transcript ID: BOK-AS1:6 
LNCipedia gene ID: BOK-AS1
Location (hg38): chr2:241546723-241550061
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005364
Alternative gene names: XLOC_002552; linc-STK25; NCRNA00151; NAToB


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.51 non-coding 
CPAT coding probability 3.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BOK-AS1:6 no no no no

Available literature

  1. Zhang (2009), A natural antisense transcript, BOKAS, regulates the pro-apoptotic activity of human Bok., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THAP4-1:2
3.1 lnc-THAP4-1:3
4.0 BOK-AS1:6
4.1 BOK-AS1:6
5.0 BOK-AS1:6
5.1 BOK-AS1:6
5.2 BOK-AS1:6