Transcript: BRE-AS1:1

Basic information

LNCipedia transcript ID: BRE-AS1:1 
HGNC Gene Symbol: BRE-AS1    
HGNC Full Gene Name: BRE antisense RNA 1
RefSeq ID: NR_028308
Location (hg38): chr2:27889456-27891114
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1659 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT069808; NR_028308; NR_028308.1
Alternative gene names: ; BRE-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.4505 non-coding 
CPAT coding probability 9.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BRE-AS1:1 no no no no

Available literature

  1. Pruunsild (2017), Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program., Cell Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RBKS-3:1
4.0 BRE-AS1:1
4.1 BRE-AS1:1
5.0 BRE-AS1:1
5.1 BRE-AS1:1
5.2 BRE-AS1:1