Transcript: BTG3-AS1:10

Basic information

LNCipedia transcript ID: BTG3-AS1:10 
HGNC Gene Symbol: BTG3-AS1    
HGNC Full Gene Name: BTG3 antisense RNA 1
Ensembl Gene ID: ENSG00000280594
Ensembl Transcript ID: ENST00000626994
Location (hg38): chr21:17611744-17633199
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 552 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626994.1
Alternative gene names: ENSG00000280594.1; AP000432.1; BTG3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -45.5504 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BTG3-AS1:10 yes no no no

Available literature

  1. Taniue (2016), ASBEL-TCF3 complex is required for the tumorigenicity of colorectal cancer cells., Proc. Natl. Acad. Sci. U.S.A.
  2. Yanagida (2013), ASBEL, an ANA/BTG3 antisense transcript required for tumorigenicity of ovarian carcinoma., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CXADR-4:3
4.1 lnc-CXADR-4:3
5.0 lnc-CXADR-4:3
5.1 BTG3-AS1:2
5.2 BTG3-AS1:10