Transcript: C10orf71-AS1:1

Basic information

LNCipedia transcript ID: C10orf71-AS1:1 
HGNC Gene Symbol: C10orf71-AS1    
HGNC Full Gene Name: C10orf71 antisense RNA 1
Ensembl Gene ID: ENSG00000236208
Ensembl Transcript ID: ENST00000442700
Location (hg38): chr10:49296450-49299018
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017979; ENST00000442700.1; RP11-255M1.1-002; OTTHUMT00000047983.1
Alternative gene names: XLOC_008817; linc-C10orf128-2; ENSG00000236208.1; RP11-255M1.1; OTTHUMG00000018189.1; C10orf71-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.1575 non-coding 
CPAT coding probability 3.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C10orf71-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DRGX-2:1
3.1 lnc-DRGX-2:1
4.0 C10orf71-AS1:1
4.1 C10orf71-AS1:1
5.0 C10orf71-AS1:1
5.1 C10orf71-AS1:1
5.2 C10orf71-AS1:1