Transcript: C1RL-AS1:7

Basic information

LNCipedia transcript ID: C1RL-AS1:7 
LNCipedia gene ID: C1RL-AS1
Location (hg38): chr12:7119006-7121848
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000545775.1; ABC12-49244600F4.3-201
Alternative gene names: ENSG00000205885.3; ABC12-49244600F4.3; OTTHUMG00000168164.1; C1RL-AS1; MATL2963


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.8248 non-coding 
CPAT coding probability 6.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C1RL-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLSTN3-1:5
4.0 C1RL-AS1:7
4.1 C1RL-AS1:7
5.0 C1RL-AS1:7
5.1 C1RL-AS1:7
5.2 C1RL-AS1:7