Transcript: C5orf66-AS1:1

Basic information

LNCipedia transcript ID: C5orf66-AS1:1 
LNCipedia gene ID: C5orf66-AS1
Location (hg38): chr5:135038838-135040047
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 836 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00009789; ENST00000507035; ENST00000507035.1; CTC-276P9.1-001; OTTHUMT00000371600.1; NONHSAT103894
Alternative gene names: XLOC_005009; linc-PITX1-3; ENSG00000249082; CTC-276P9.1; ENSG00000249082.1; OTTHUMG00000163077.1; Epist


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.905 non-coding 
CPAT coding probability 30.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C5orf66-AS1:1 no no no no

Available literature

  1. Wei (2015), Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor., Oncotarget
  2. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITX1-1:1
3.1 lnc-PITX1-1:1
4.0 C5orf66-AS1:1
4.1 C5orf66-AS1:1
5.0 C5orf66-AS1:1
5.1 C5orf66-AS1:1
5.2 C5orf66-AS1:1