Transcript: C5orf66-AS1:3

Basic information

LNCipedia transcript ID: C5orf66-AS1:3 
LNCipedia gene ID: C5orf66-AS1
RefSeq ID: NR_105050
Location (hg38): chr5:135038831-135040047
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 838 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105050; NR_105050.1
Alternative gene names: CTC-276P9.1; Epist; C5orf66-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.905 non-coding 
CPAT coding probability 65.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
C5orf66-AS1:3 no no no no

Available literature

  1. Wei (2015), Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor., Oncotarget
  2. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PITX1-1:3
4.0 C5orf66-AS1:3
4.1 C5orf66-AS1:3
5.0 C5orf66-AS1:3
5.1 C5orf66-AS1:3
5.2 C5orf66-AS1:3