Transcript: C5orf66-AS2:2

Basic information

LNCipedia transcript ID: C5orf66-AS2:2 
LNCipedia gene ID: C5orf66-AS2
Location (hg38): chr5:135236235-135248177
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2159 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00009312
Alternative gene names: XLOC_005011; linc-PITX1-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.3204 non-coding 
CPAT coding probability 9.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C5orf66-AS2:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-H2AFY-1:1
3.1 lnc-CTC-349C3.2.1-1:2
4.0 C5orf66-AS2:2
4.1 C5orf66-AS2:2
5.0 C5orf66-AS2:2
5.1 C5orf66-AS2:2
5.2 C5orf66-AS2:2