Transcript: C5orf66-AS2:4

Basic information

LNCipedia transcript ID: C5orf66-AS2:4 
HGNC Gene Symbol: C5orf66-AS2    
HGNC Full Gene Name: C5orf66 antisense RNA 2
Ensembl Gene ID: ENSG00000249647
Ensembl Transcript ID: ENST00000555344
Location (hg38): chr5:135247046-135247815
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555344.1; CTC-349C3.2-002; OTTHUMT00000411866.1; NONHSAT103900
Alternative gene names: ENSG00000249647.2; CTC-349C3.2; OTTHUMG00000163309.2; C5orf66-AS2;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.3643 non-coding 
CPAT coding probability 15.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C5orf66-AS2:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTC-349C3.2.1-1:3
4.0 C5orf66-AS2:4
4.1 C5orf66-AS2:4
5.0 C5orf66-AS2:4
5.1 C5orf66-AS2:4
5.2 C5orf66-AS2:4