Transcript: C9orf135-DT:11

Basic information

LNCipedia transcript ID: C9orf135-DT:11 
HGNC Gene Symbol: C9orf135-DT    
HGNC Full Gene Name: C9orf135 divergent transcript
Ensembl Gene ID: ENSG00000225626
Ensembl Transcript ID: ENST00000439418
Location (hg38): chr9:69818983-69820739
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1375 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439418; TCONS_00015830; ENST00000439418.1; RP11-109D9.3-002; OTTHUMT00000052588.1; NONHSAT131788
Alternative gene names: ENSG00000225626; XLOC_007727; linc-PTAR1-6; RP11-109D9.3; ENSG00000225626.2; OTTHUMG00000019983.2; C9orf135-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.2079 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C9orf135-DT:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTAR1-2:1
3.1 lnc-PTAR1-2:1
4.0 C9orf135-AS1:1
4.1 C9orf135-AS1:1
5.0 C9orf135-AS1:1
5.1 C9orf135-DT:2
5.2 C9orf135-DT:11