Transcript: C9orf135-DT:18

Basic information

LNCipedia transcript ID: C9orf135-DT:18 
HGNC Gene Symbol: C9orf135-DT    
HGNC Full Gene Name: C9orf135 divergent transcript
Ensembl Gene ID: ENSG00000225626
Ensembl Transcript ID: ENST00000453410
Location (hg38): chr9:69819405-69820667
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 975 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453410; ENST00000453410.1; RP11-109D9.3-001; OTTHUMT00000052587.1; NONHSAT131789
Alternative gene names: ENSG00000225626; RP11-109D9.3; ENSG00000225626.2; OTTHUMG00000019983.2; C9orf135-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.2079 non-coding 
CPAT coding probability 8.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C9orf135-DT:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTAR1-2:3
3.1 lnc-PTAR1-2:3
4.0 C9orf135-AS1:4
4.1 C9orf135-AS1:4
5.0 C9orf135-AS1:4
5.1 C9orf135-DT:9
5.2 C9orf135-DT:18