Transcript: C9orf41-AS1:3

Basic information

LNCipedia transcript ID: C9orf41-AS1:3 
HGNC Gene Symbol: C9orf41-AS1    
HGNC Full Gene Name: C9orf41 antisense RNA 1
Ensembl Gene ID: ENSG00000203321
Ensembl Transcript ID: ENST00000455609
Location (hg38): chr9:74952968-74996293
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 719 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455609; ENST00000455609.1; RP11-197P3.4-001; OTTHUMT00000052700.1; NONHSAT131930
Alternative gene names: ENSG00000203321; RP11-197P3.4; ENSG00000203321.2; OTTHUMG00000020029.1; C9orf41-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.8476 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
C9orf41-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OSTF1-2:1
3.1 lnc-OSTF1-2:1
4.0 C9orf41-AS1:3
4.1 C9orf41-AS1:3
5.0 C9orf41-AS1:3
5.1 C9orf41-AS1:3
5.2 C9orf41-AS1:3