Transcript: CACNA1C-AS1:3

Basic information

LNCipedia transcript ID: CACNA1C-AS1:3 
LNCipedia gene ID: CACNA1C-AS1
RefSeq ID: NR_045725
Location (hg38): chr12:2676001-2691157
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2230 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT025465; NR_045725; NR_045725.1
Alternative gene names: ; CACNA1C-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 406.9487 coding 
CPAT coding probability 19.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CACNA1C-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRIP2-5:4
4.0 CACNA1C-AS1:3
4.1 CACNA1C-AS1:3
5.0 CACNA1C-AS1:3
5.1 CACNA1C-AS1:3
5.2 CACNA1C-AS1:3