Transcript: CACNA1G-AS1:3

Basic information

LNCipedia transcript ID: CACNA1G-AS1:3 ?
HGNC Gene Symbol: CACNA1G-AS1    ?
HGNC Full Gene Name: CACNA1G antisense RNA 1
Location (hg19): chr17:48634535-48636771
Strand: -
Class: intergenic
Transcript size: 368 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000508920; ENST00000508920.1; RP11-94C24.10-003; OTTHUMT00000367678.1; NONHSAT054703
Alternative gene names: ENSG00000250107; RP11-94C24.10; ENSG00000250107.1; OTTHUMG00000162163.1; CACNA1G-AS1;


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score non-coding ?
CPAT coding probability 0.13% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
CACNA1G-AS1:3 yes yes

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -141.61
Randfold P-value: 0.171

Targetting miRNAs

MirTarget2 predictions:
MicroRNAMirTarget2 score ?
hsa-miR-3160-5p 54.58
hsa-miR-3667-5p 53.55
hsa-miR-516a-3p 51.98
hsa-miR-516b-3p 51.98

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-CHAD-4:3
4.0 CACNA1G-AS1:3
1.3 lnc-CHAD-2:3