Transcript: CADM3-AS1:1

Basic information

LNCipedia transcript ID: CADM3-AS1:1 
HGNC Gene Symbol: CADM3-AS1    
HGNC Full Gene Name: CADM3 antisense RNA 1
Ensembl Gene ID: ENSG00000225670
Ensembl Transcript ID: ENST00000609696
Location (hg38): chr1:159201306-159207973
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 480 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609696.1
Alternative gene names: ENSG00000225670.3; CTA-134P22.2; ENSG00000225670.4; CADM3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -397.9691 non-coding 
CPAT coding probability 16.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CADM3-AS1:1 no no no no

Available literature

  1. Zhu (2014), Long noncoding RNA expression signatures of bladder cancer revealed by microarray., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AIM2-1:2
4.0 CADM3-AS1:1
4.1 CADM3-AS1:1
5.0 CADM3-AS1:1
5.1 CADM3-AS1:1
5.2 CADM3-AS1:1