Transcript: CAHM:1

Basic information

LNCipedia transcript ID: CAHM:1 
HGNC Gene Symbol: CAHM    
HGNC Full Gene Name: colon adenocarcinoma hypermethylated
Ensembl Gene ID: ENSG00000270419
Ensembl Transcript ID: ENST00000604200
Location (hg38): chr6:163413065-163413960
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 896 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT115962; ENST00000604200.1
Alternative gene names: ENSG00000270419.1; CAHM; LINC00468


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.7493 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAHM:1 no no no no

Available literature

  1. Pedersen (2014), CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia., Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL078585.1-15:1
4.0 CAHM:1
4.1 CAHM:1
5.0 CAHM:1
5.1 CAHM:1
5.2 CAHM:1