Transcript: CAHM:4

Basic information

LNCipedia transcript ID: CAHM:4 
LNCipedia gene ID: CAHM
Location (hg38): chr6:163414046-163414509
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 464 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000270419.1|FTMT22200011506.1
Alternative gene names: LINC00468


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAHM:4 yes no no no

Available literature

  1. Pedersen (2014), CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia., Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CAHM:4
5.0 CAHM:4
5.1 CAHM:4
5.2 CAHM:4