Transcript: CAPN10-DT:6

Basic information

LNCipedia transcript ID: CAPN10-DT:6 
HGNC Gene Symbol: CAPN10-DT    
HGNC Full Gene Name: CAPN10 divergent transcript
Ensembl Gene ID: ENSG00000260942
Ensembl Transcript ID: ENST00000567819
Location (hg38): chr2:240582700-240586699
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 4000 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567819.1; RP11-27M15.1-001; OTTHUMT00000409988.1; NONHSAT077838
Alternative gene names: ENSG00000260942.1; RP11-27M15.1; OTTHUMG00000170676.1; CAPN10-AS1; locus959


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1883 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAPN10-DT:6 no no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKMY1-2:1
4.0 CAPN10-AS1:1
4.1 CAPN10-AS1:1
5.0 CAPN10-AS1:1
5.1 CAPN10-DT:2
5.2 CAPN10-DT:6