Transcript: CAPN10-DT:8

Basic information

LNCipedia transcript ID: CAPN10-DT:8 
LNCipedia gene ID: CAPN10-DT
Location (hg38): chr2:240582700-240586610
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3911 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260942.1|ENST00000567819.1
Alternative gene names: locus959


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.1883 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAPN10-DT:8 no no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CAPN10-AS1:4
5.0 CAPN10-AS1:4
5.1 CAPN10-DT:4
5.2 CAPN10-DT:8