Transcript: CAPN10-DT:9

Basic information

LNCipedia transcript ID: CAPN10-DT:9 
LNCipedia gene ID: CAPN10-DT
RefSeq ID: NR_103792
Location (hg38): chr2:240582750-240586316
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3567 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_103792; NR_103792.1
Alternative gene names: locus959; CAPN10-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.9891 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CAPN10-DT:9 no no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKMY1-2:2
4.0 CAPN10-AS1:2
4.1 CAPN10-AS1:2
5.0 CAPN10-AS1:2
5.1 CAPN10-DT:5
5.2 CAPN10-DT:9