Transcript: CARD8-AS1:1

Basic information

LNCipedia transcript ID: CARD8-AS1:1 
LNCipedia gene ID: CARD8-AS1
Location (hg38): chr19:48255675-48258195
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1965 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000499475
Alternative gene names: ENSG00000247217; AC008392.1; LOC100505812


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.3565 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARD8-AS1:1 no no no no

Available literature

  1. Lv (2018), Polymorphism in lncRNA AC008392.1 and its interaction with smoking on the risk of lung cancer in a Chinese population., Cancer Manag Res
  2. Yin (2015), Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer., PLoS ONE
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF114-1:1
3.1 lnc-ZNF114-1:1
4.0 CARD8-AS1:1
4.1 CARD8-AS1:1
5.0 CARD8-AS1:1
5.1 CARD8-AS1:1
5.2 CARD8-AS1:1