Transcript: CARD8-AS1:6

Basic information

LNCipedia transcript ID: CARD8-AS1:6 
LNCipedia gene ID: CARD8-AS1
Location (hg38): chr19:48255689-48258199
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1955 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000268001.1|ENST00000602172.1
Alternative gene names: LOC100505812


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.3565 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CARD8-AS1:6 no no no no

Available literature

  1. Lv (2018), Polymorphism in lncRNA AC008392.1 and its interaction with smoking on the risk of lung cancer in a Chinese population., Cancer Manag Res
  2. Yin (2015), Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer., PLoS ONE
  3. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CARD8-AS1:6
5.0 CARD8-AS1:6
5.1 CARD8-AS1:6
5.2 CARD8-AS1:6