Transcript: CASC11:2

Basic information

LNCipedia transcript ID: CASC11:2 
LNCipedia gene ID: CASC11
Location (hg38): chr8:127686343-127733967
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3224 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000502463; ENST00000502463.2; RP11-1136L8.1-001; OTTHUMT00000380687.1; NONHSAT129040
Alternative gene names: ENSG00000249375; RP11-1136L8.1; ENSG00000249375.2; OTTHUMG00000164870.1; TCONS_00014535; LINC00990; CARLo-7; ENST00000518376


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8322 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC11:2 no no no no

Available literature

  1. Yin (2017), Identification of long noncoding RNA expression profile in oxaliplatin-resistant hepatocellular carcinoma cells., Gene
  2. Kim (2014), Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM75-1:2
3.1 lnc-TMEM75-1:2
4.0 CASC11:2
4.1 CASC11:2
5.0 CASC11:2
5.1 CASC11:2
5.2 CASC11:2