Transcript: CASC15:16

Basic information

LNCipedia transcript ID: CASC15:16 
LNCipedia gene ID: CASC15
Location (hg38): chr6:22056546-22110928
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000444265; ENST00000444265.1; LINC00340-001; OTTHUMT00000039992.1; NONHSAT108057
Alternative gene names: ENSG00000238274; RP1-67M12.1; ENSG00000238274.2; LINC00340; OTTHUMG00000014345.1; ; lnc-SOX4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.9343 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC15:16 no no no no

Available literature

  1. Fernando (2017), The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia., Mol. Cancer
  2. Lessard (2015), The CASC15 Long Intergenic Noncoding RNA Locus Is Involved in Melanoma Progression and Phenotype Switching., J. Invest. Dermatol.
  3. Russell (2015), CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus., Cancer Res.
  4. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX4-1:1
3.1 lnc-SOX4-1:1
4.0 CASC15:16
4.1 CASC15:16
5.0 CASC15:16
5.1 CASC15:16
5.2 CASC15:16