Transcript: CASC15:5

Basic information

LNCipedia transcript ID: CASC15:5 
HGNC Gene Symbol: CASC15    
HGNC Full Gene Name: cancer susceptibility 15
Ensembl Gene ID: ENSG00000272168
Ensembl Transcript ID: ENST00000606851
Location (hg38): chr6:21666444-22194387
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1889 bp
Exons: 12
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT108049; NR_015410; ENST00000606851.1; ENST00000606851.5
Alternative gene names: ENSG00000272168.1; CASC15; ENSG00000272168.5; ; ENSG00000272168.6; lnc-SOX4-1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.3633 non-coding 
CPAT coding probability 9.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC15:5 no no no no

Available literature

  1. Fernando (2017), The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia., Mol. Cancer
  2. Lessard (2015), The CASC15 Long Intergenic Noncoding RNA Locus Is Involved in Melanoma Progression and Phenotype Switching., J. Invest. Dermatol.
  3. Russell (2015), CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus., Cancer Res.
  4. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX4-1:6
4.0 CASC15:5
4.1 CASC15:5
5.0 CASC15:5
5.1 CASC15:5
5.2 CASC15:5