Transcript: CASC15:71

Basic information

LNCipedia transcript ID: CASC15:71 
HGNC Gene Symbol: CASC15    
HGNC Full Gene Name: cancer susceptibility 15
Ensembl Gene ID: ENSG00000272168
Ensembl Transcript ID: ENST00000561912
Location (hg38): chr6:22146885-22368328
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1449 bp
Exons: 11
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561912.2
Alternative gene names: ENSG00000272168.6; CASC15; lnc-SOX4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.5444 non-coding 
CPAT coding probability 48.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CASC15:71 no no no no

Available literature

  1. Fernando (2017), The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia., Mol. Cancer
  2. Lessard (2015), The CASC15 Long Intergenic Noncoding RNA Locus Is Involved in Melanoma Progression and Phenotype Switching., J. Invest. Dermatol.
  3. Russell (2015), CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus., Cancer Res.
  4. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CASC15:71
5.0 CASC15:71
5.1 CASC15:71
5.2 CASC15:71