Transcript: CASC15:72

Basic information

LNCipedia transcript ID: CASC15:72 
LNCipedia gene ID: CASC15
Location (hg38): chr6:22260424-22317798
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 341 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000561912.1; RP3-404K8.2-001; OTTHUMT00000422152.2; NONHSAT108073
Alternative gene names: ENSG00000260049.1; RP3-404K8.2; OTTHUMG00000173107.2; lnc-SOX4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.5444 non-coding 
CPAT coding probability 18.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC15:72 no no no no

Available literature

  1. Fernando (2017), The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia., Mol. Cancer
  2. Lessard (2015), The CASC15 Long Intergenic Noncoding RNA Locus Is Involved in Melanoma Progression and Phenotype Switching., J. Invest. Dermatol.
  3. Russell (2015), CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus., Cancer Res.
  4. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDGFL1-3:1
4.0 lnc-HDGFL1-3:1
4.1 CASC15:72
5.0 CASC15:72
5.1 CASC15:72
5.2 CASC15:72