Transcript: CASC15:74

Basic information

LNCipedia transcript ID: CASC15:74 
LNCipedia gene ID: CASC15
Location (hg38): chr6:22349218-22517711
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011730; NONHSAT108076
Alternative gene names: XLOC_005198; linc-HDGFL1-1; lnc-SOX4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.5597 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC15:74 no no no no

Available literature

  1. Fernando (2017), The lncRNA CASC15 regulates SOX4 expression in RUNX1-rearranged acute leukemia., Mol. Cancer
  2. Lessard (2015), The CASC15 Long Intergenic Noncoding RNA Locus Is Involved in Melanoma Progression and Phenotype Switching., J. Invest. Dermatol.
  3. Russell (2015), CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus., Cancer Res.
  4. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDGFL1-2:1
3.1 lnc-HDGFL1-2:1
4.0 lnc-HDGFL1-2:1
4.1 CASC15:74
5.0 CASC15:74
5.1 CASC15:74
5.2 CASC15:74