Transcript: CASC16:3

Basic information

LNCipedia transcript ID: CASC16:3 
LNCipedia gene ID: CASC16
Location (hg38): chr16:52552074-52606976
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 966 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024655; NONHSAT142527
Alternative gene names: XLOC_011943; linc-TOX3-3; LOC643714


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.6038 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC16:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOX3-1:2
3.1 lnc-TOX3-1:3
4.0 CASC16:3
4.1 CASC16:3
5.0 CASC16:3
5.1 CASC16:3
5.2 CASC16:3