Transcript: CASC16:4

Basic information

LNCipedia transcript ID: CASC16:4 
LNCipedia gene ID: CASC16
RefSeq ID: NR_033920
Location (hg38): chr16:52552087-52606975
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1001 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00024234; NONHSAT142528; NR_033920; NR_033920.1
Alternative gene names: XLOC_011943; linc-TOX3-3; LOC643714; CASC16


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.2245 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC16:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOX3-1:3
3.1 lnc-TOX3-1:4
4.0 CASC16:4
4.1 CASC16:4
5.0 CASC16:4
5.1 CASC16:4
5.2 CASC16:4