Transcript: CASC16:5

Basic information

LNCipedia transcript ID: CASC16:5 
LNCipedia gene ID: CASC16
Location (hg38): chr16:52552096-52606935
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 952 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000510238
Alternative gene names: ENSG00000249231; AC026462.2; LOC643714


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.008 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC16:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOX3-1:4
3.1 lnc-TOX3-1:5
4.0 CASC16:5
4.1 CASC16:5
5.0 CASC16:5
5.1 CASC16:5
5.2 CASC16:5