Transcript: CASC17:1

Basic information

LNCipedia transcript ID: CASC17:1 
LNCipedia gene ID: CASC17
RefSeq ID: NR_104152
Location (hg38): chr17:71097774-71202179
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2062 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104152; NR_104152.1
Alternative gene names: LINC00600; CASC17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.7436 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC17:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A11-4:3
4.0 CASC17:1
4.1 CASC17:1
5.0 CASC17:1
5.1 CASC17:1
5.2 CASC17:1