Transcript: CASC17:2

Basic information

LNCipedia transcript ID: CASC17:2 
LNCipedia gene ID: CASC17
Location (hg38): chr17:71097774-71202177
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2060 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025148; NONHSAT055629
Alternative gene names: XLOC_012563; linc-ABCA5-2; LINC00600


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.7436 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC17:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-6:1
3.1 lnc-SLC39A11-4:2
4.0 CASC17:2
4.1 CASC17:2
5.0 CASC17:2
5.1 CASC17:2
5.2 CASC17:2