Transcript: CASC18:3

Basic information

LNCipedia transcript ID: CASC18:3 
LNCipedia gene ID: CASC18
RefSeq ID: NR_110109
Location (hg38): chr12:105704203-105744063
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2621 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110109; NR_110109.1
Alternative gene names: LOC101929110; CASC18


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4241 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC18:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf75-2:4
4.0 CASC18:3
4.1 CASC18:3
5.0 CASC18:3
5.1 CASC18:3
5.2 CASC18:3