Transcript: CASC18:4

Basic information

LNCipedia transcript ID: CASC18:4 
HGNC Gene Symbol: CASC18    
HGNC Full Gene Name: cancer susceptibility 18
Ensembl Gene ID: ENSG00000257859
Ensembl Transcript ID: ENST00000547465
Location (hg38): chr12:105706774-105742229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547465; ENST00000547465.1; RP11-266E14.1-002; OTTHUMT00000405600.1; NONHSAT030460
Alternative gene names: ENSG00000257859; RP11-266E14.1; ENSG00000257859.1; OTTHUMG00000169725.1; CASC18; LOC101929110


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.471 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC18:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C12orf75-2:2
3.1 lnc-C12orf75-2:2
4.0 CASC18:4
4.1 CASC18:4
5.0 CASC18:4
5.1 CASC18:4
5.2 CASC18:4