Transcript: CASC23:1

Basic information

LNCipedia transcript ID: CASC23:1 
LNCipedia gene ID: CASC23
RefSeq ID: NR_125366
Location (hg38): chr11:8011278-8016509
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1583 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125366; NR_125366.1
Alternative gene names: LINC01464; CASC23


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -74.6297 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC23:1 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NLRP10-1:5
4.0 CASC23:1
4.1 CASC23:1
5.0 CASC23:1
5.1 CASC23:1
5.2 CASC23:1