Transcript: CASC23:2

Basic information

LNCipedia transcript ID: CASC23:2 
LNCipedia gene ID: CASC23
Location (hg38): chr11:8012756-8016490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 605 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020038; NONHSAT017818
Alternative gene names: XLOC_009367; linc-NLRP10-1; LINC01464


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.6297 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC23:2 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NLRP10-1:1
3.1 lnc-NLRP10-1:1
4.0 CASC23:2
4.1 CASC23:2
5.0 CASC23:2
5.1 CASC23:2
5.2 CASC23:2