Transcript: CASC23:4

Basic information

LNCipedia transcript ID: CASC23:4 
HGNC Gene Symbol: CASC23    
HGNC Full Gene Name: cancer susceptibility 23
Ensembl Gene ID: ENSG00000255420
Ensembl Transcript ID: ENST00000534076
Location (hg38): chr11:8011278-8016489
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1563 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534076.1; RP11-236J17.3-001; OTTHUMT00000385820.1; NONHSAT017817
Alternative gene names: ENSG00000255420.1; RP11-236J17.3; OTTHUMG00000165689.1; CASC23; LINC01464


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.6297 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC23:4 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NLRP10-1:2
4.0 CASC23:4
4.1 CASC23:4
5.0 CASC23:4
5.1 CASC23:4
5.2 CASC23:4