Transcript: CASC23:5

Basic information

LNCipedia transcript ID: CASC23:5 
LNCipedia gene ID: CASC23
Location (hg38): chr11:8013599-8016485
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT017819
Alternative gene names: LINC01464


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.6297 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC23:5 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NLRP10-1:4
4.0 CASC23:5
4.1 CASC23:5
5.0 CASC23:5
5.1 CASC23:5
5.2 CASC23:5