Transcript: CASC2:12

Basic information

LNCipedia transcript ID: CASC2:12 
HGNC Gene Symbol: CASC2    
HGNC Full Gene Name: cancer susceptibility 2
Ensembl Gene ID: ENSG00000177640
Ensembl Transcript ID: ENST00000439517
Location (hg38): chr10:118049614-118207820
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439517; ENST00000439517.1; CASC2-004; OTTHUMT00000050580.1; NONHSAT016556
Alternative gene names: ENSG00000177640; CASC2; ENSG00000177640.11; OTTHUMG00000019127.5; ENSG00000177640.15;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -391.8778 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC2:12 no no no no

Available literature

  1. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  2. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  3. Wang (2015), Long non-coding RNA CASC2 suppresses malignancy in human gliomas by miR-21., Cell. Signal.
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EMX2-3:6
3.1 lnc-EMX2-4:6
4.0 CASC2:12
4.1 CASC2:12
5.0 CASC2:12
5.1 CASC2:12
5.2 CASC2:12