Transcript: CASC2:13

Basic information

LNCipedia transcript ID: CASC2:13 
HGNC Gene Symbol: CASC2    
HGNC Full Gene Name: cancer susceptibility 2
Ensembl Gene ID: ENSG00000177640
Ensembl Transcript ID: ENST00000614455
Location (hg38): chr10:118204289-118206581
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614455.4
Alternative gene names: ENSG00000177640.15; CASC2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.4474 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC2:13 no no no no

Available literature

  1. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  2. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  3. Wang (2015), Long non-coding RNA CASC2 suppresses malignancy in human gliomas by miR-21., Cell. Signal.
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 CASC2:13
4.1 CASC2:13
5.0 CASC2:13
5.1 CASC2:13
5.2 CASC2:13