Transcript: CASC2:16

Basic information

LNCipedia transcript ID: CASC2:16 
LNCipedia gene ID: CASC2
Location (hg38): chr10:118046279-118206659
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 679 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000177640.11|ENST00000414722.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -107.1943 non-coding 
CPAT coding probability 33.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC2:16 yes no no no

Available literature

  1. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  2. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  3. Wang (2015), Long non-coding RNA CASC2 suppresses malignancy in human gliomas by miR-21., Cell. Signal.
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 CASC2:16
5.0 CASC2:16
5.1 CASC2:16
5.2 CASC2:16