Transcript: CASC6:3

Basic information

LNCipedia transcript ID: CASC6:3 
HGNC Gene Symbol: CASC6    
HGNC Full Gene Name: cancer susceptibility 6
Ensembl Gene ID: ENSG00000224944
Ensembl Transcript ID: ENST00000437768
Location (hg38): chr6:91629915-91690428
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 733 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437768; ENST00000437768.1; RP3-433F14.3-001; OTTHUMT00000041538.1
Alternative gene names: ENSG00000224944; RP3-433F14.3; ENSG00000224944.1; OTTHUMG00000015221.1; CASC6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5966 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K7-2:1
3.1 lnc-MAP3K7-2:1
4.0 CASC6:3
4.1 CASC6:3
5.0 CASC6:3
5.1 CASC6:3
5.2 CASC6:3