Transcript: CATIP-AS1:8

Basic information

LNCipedia transcript ID: CATIP-AS1:8 
LNCipedia gene ID: CATIP-AS1
Ensembl Gene ID: ENSG00000273361
Ensembl Transcript ID: ENST00000608367
Location (hg38): chr2:218398743-218399219
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 477 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608367.1
Alternative gene names: ENSG00000273361.1; RP11-378A13.2; ; AC021016.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.4423 non-coding 
CPAT coding probability 4.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CATIP-AS1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP37-1:1
4.0 lnc-USP37-1:1
4.1 CATIP-AS1:8
5.0 CATIP-AS1:8
5.1 CATIP-AS1:8
5.2 CATIP-AS1:8