Transcript: CBR3-AS1:12

Basic information

LNCipedia transcript ID: CBR3-AS1:12 
HGNC Gene Symbol: CBR3-AS1    
HGNC Full Gene Name: CBR3 antisense RNA 1
Ensembl Gene ID: ENSG00000236830
Ensembl Transcript ID: ENST00000427491
Location (hg38): chr21:36141396-36156306
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 741 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427491; ENST00000427491.1; CBR3-AS1-003; OTTHUMT00000194621.1
Alternative gene names: ENSG00000236830; AP000689.8; ENSG00000236830.1; CBR3-AS1; OTTHUMG00000086607.1; ENSG00000236830.2; ENSG00000236830.6; PlncRNA-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.735 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CBR3-AS1:12 no no no no

Available literature

  1. Song (2018), Long Noncoding RNA PlncRNA-1 Promotes Colorectal Cancer Cell Progression by Regulating the PI3K/Akt Signaling Pathway., Oncol. Res.
  2. Liu (2015), Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer., Mol Biosyst
  3. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  4. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  5. Wang (2014), Upregulation of the long non-coding RNA PlncRNA-1 promotes esophageal squamous carcinoma cell proliferation and correlates with advanced clinical stage., Dig. Dis. Sci.
  6. Cui (2013), The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor., Urol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SETD4-2:2
3.1 lnc-SETD4-3:2
4.0 CBR3-AS1:12
4.1 CBR3-AS1:12
5.0 CBR3-AS1:12
5.1 CBR3-AS1:12
5.2 CBR3-AS1:12