Transcript: CCDC144NL-AS1:13

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:13 
LNCipedia gene ID: CCDC144NL-AS1
Location (hg38): chr17:20938113-20939518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1406 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT146858
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
KSCLVLITVEK 94.1176470588235% sense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.8862 coding 
CPAT coding probability 10.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CCDC144NL-AS1:13 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:22
4.0 CCDC144NL-AS1:13
4.1 CCDC144NL-AS1:13
5.0 CCDC144NL-AS1:13
5.1 CCDC144NL-AS1:13
5.2 CCDC144NL-AS1:13