Transcript: CCDC144NL-AS1:15

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:15 
LNCipedia gene ID: CCDC144NL-AS1
RefSeq ID: NR_123730
Location (hg38): chr17:20938520-20982357
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1688 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_123730; NR_123730.1
Alternative gene names: ; LOC339260


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.0439 non-coding 
CPAT coding probability 51.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CCDC144NL-AS1:15 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:26
4.0 CCDC144NL-AS1:15
4.1 CCDC144NL-AS1:15
5.0 CCDC144NL-AS1:15
5.1 CCDC144NL-AS1:15
5.2 CCDC144NL-AS1:15