Transcript: CCDC144NL-AS1:17

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:17 
LNCipedia gene ID: CCDC144NL-AS1
Location (hg38): chr17:20938538-20958347
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 744 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000437829.1; RP11-344E13.3-007; OTTHUMT00000444052.1
Alternative gene names: ENSG00000233098.3; RP11-344E13.3; OTTHUMG00000178937.2; ENSG00000233098.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.0439 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:17 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:14
4.0 CCDC144NL-AS1:17
4.1 CCDC144NL-AS1:17
5.0 CCDC144NL-AS1:17
5.1 CCDC144NL-AS1:17
5.2 CCDC144NL-AS1:17