Transcript: CCDC144NL-AS1:2

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:2 
LNCipedia gene ID: CCDC144NL-AS1
RefSeq ID: NR_104185
Location (hg38): chr17:20868433-20905230
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3469 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104185; NR_104185.1
Alternative gene names: ; CCDC144NL-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.9543 non-coding 
CPAT coding probability 5.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:2 no no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:21
4.0 CCDC144NL-AS1:2
4.1 CCDC144NL-AS1:2
5.0 CCDC144NL-AS1:2
5.1 CCDC144NL-AS1:2
5.2 CCDC144NL-AS1:2