Transcript: CCDC144NL-AS1:22

Basic information

LNCipedia transcript ID: CCDC144NL-AS1:22 
HGNC Gene Symbol: CCDC144NL-AS1    
HGNC Full Gene Name: CCDC144NL antisense RNA 1
Ensembl Gene ID: ENSG00000233098
Ensembl Transcript ID: ENST00000581958
Location (hg38): chr17:20951431-21002276
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1188 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581958.1; RP11-344E13.3-014; OTTHUMT00000444057.1; NONHSAT146864; ENST00000581958.5
Alternative gene names: ENSG00000233098.3; RP11-344E13.3; OTTHUMG00000178937.2; ENSG00000233098.4; ENSG00000233098.8; CCDC144NL-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.5475 non-coding 
CPAT coding probability 25.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CCDC144NL-AS1:22 yes no no no

Available literature

  1. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHRS7B-5:18
4.0 CCDC144NL-AS1:22
4.1 CCDC144NL-AS1:22
5.0 CCDC144NL-AS1:22
5.1 CCDC144NL-AS1:22
5.2 CCDC144NL-AS1:22